1. SuperSAGE: Powerful Serial Analysis of Gene Expression
Hideo Matsumura, Naoya Urasaki, Kentaro Yoshida, Detlev H. Krüger, Günter Kahl, and Ryohei Terauchi
2. Northern Blot Analysis for Expression Profiling of mRNAs and Small RNAs
Ankur R. Bhardwaj, Ritu Pandey, Manu Agarwal, and Surekha Katiyar-Agarwal
3. Construction of RNA-Seq Libraries from Large and Microscopic Tissues for the Illumina Sequencing Platform
Hagop S. Atamian and Isgouhi Kaloshian
4. Strand-Specific RNA-Seq Applied to Malaria Samples
Nadia Ponts, Duk-Won D. Chung, and Karine G. Le Roch
5. RNA In Situ Hybridization in Arabidopsis
Miin-Feng Wu and Doris Wagner
6. Laser Microdissection of Cells and Isolation of High-Quality RNA After Cryosectioning
Marta Barcala, Carmen Fenoll, and Carolina Escobar
7. Detection and Quantification of Alternative Splicing Variants Using RNA-Seq
Douglas W. Bryant, Jr., Henry D. Priest, and Todd C. Mockler
8. Separating and Analyzing Sulfur-Containing RNAs with Organomercury Gels
Elisa Biondi and Donald H. Burke
9. RNAse Mapping and Quantitation of RNA Isoforms
Lakshminarayan K. Venkatesh, Olufemi Fasina, and David J. Pintel
10. Detection and Quantification of Viral and Satellite RNAs in Plant Hosts
Sun-Jung Kwon, Jang-Kyun Seo, and A.L.N. Rao
11. In Situ Detection of Mature miRNAs in Plants Using LNA-Modified DNA Probes
Xiaozhen Yao, Hai Huang, and Lin Xu
12. Small RNA Isolation and Library Construction for Expression Profiling of Small RNAs from Neurospora and Fusarium Using Illumina High Throughput Deep Sequencing
Gyungsoon Park and Katherine A. Borkovich
13. Isolation and Profiling of Protein-Associated Small RNAs
Hongwei Zhao, Yifan Lii, Pei Zhu, and Hailing Jin
14. New Virus Discovery by Deep Sequencing of Small RNAs
Kashmir Singh, Ravneet Kaur, and Wenping Qiu
15. Global Assembly of Expressed Sequence Tags (ESTs)
Foo Cheung
16. Computational Analysis of RNA-Seq
Scott A. Givan, Christopher A. Bottoms, and William G. Spollen
17. Identification of MicroRNAs and Natural Antisense Transcript-Originated Endogenous siRNAs from Small-RNA Deep Sequencing Data
Weixiong Zhang, Xuefeng Zhou, Xiang Zhou, and Jing Xia
