Part I: Low Molecular Weight Analysis Methods
1. Narrow Range Peptide Iso Electric Focusing as Peptide Prefractionation Method Prior to Tandem Mass Spectrometry Analysis
Maria Pernemalm
2. Analysis of Peptides by Denaturing Ultrafiltration and LC-MALDI-TOF-MS
Yanming An and Radoslav Goldman
3. Stable Isotope Labeling Methods in Protein Profiling
Johan Lengqvist and AnnSofi Sandberg
4. Development of MRM-based Assays for the Absolute Quantitation of Plasma Proteins
Michael A. Kuzyk, Carol E. Parker, Dominik Domanski, and Christoph H. Borchers
5. Mass Spectrometric Profiling of Low-Molecular-Weight Proteins
Matthias Rainer, Constantin Sajdik, and Günther K. Bonn
6. Developing an iMALDI Method
Brinda Shah, Jennifer D. Reid, Michael A. Kuzyk, Carol E. Parker, and Christoph H. Borchers
7. Analysis of Neuropeptides by MALDI Imaging Mass Spectrometry
Anna Karlsson, Jörg Hanrieder, Jonas Bergquist, and Malin Andersson
8. Highly Multiplexted Antibody Suspension Bead Arrays for Plasma Protein Profiling
By Kimi Drobin, Peter Nilsson and Jochen M. Schwenk
Part II: Bioinformatics of Proteomics Data
9. Protein Quantification by Peptide Quality Control (PQPQ) of Shotgun Proteomics Data
Jenny Forshed
10. Collection and Handling of Blood Specimens for Peptidomics
Harald Tammen and Rudiger Hess
Part III: Methods Applied in Clinical Research
11. An Automated RP-SCX Solid Phase Extraction Procedure for Urinary Peptidomics Biomarker Discovery Studies
Crina I.A. Balog, Rico Derks, Oleg A. Mayboroda and André M. Deelder
12. Application of Phage Display for Ligand Peptidomics to Identify Peptide Ligands Binding to AQP2-expressing Membrane Fractions
Byung-Heon Lee and Tae-Hwan Kwon
13. Protein Expression Profiling of Brain Tumor Tissue Using SELDI-MS
Carl Wibom
14. Comprehensive Analysis of MHC Ligands in Clinical Material by Immunoaffinity - Mass Spectrometry
Kie Kasuga
