1. Predictive Models for Cellular Signaling Networks
Dagmar Iber and Georgios Fengos
2. Analysing and Contraining Signaling Networks: Parameter Estimation
Florian Geir, Georgios Fengos, Federico Felizzi, Dagmar Iber
3. A Tutorial on Mathematical Modeling of Biological Signaling Pathways
Zhike Zi
4. Bistability in one Equation or Fewer
Graham A. Anderson Xuedong Liu James E. Ferrell, Jr.
5. Mathematical Investigation of How Oncogenic Ras Mutants Promote Ras Signaling
Edward C. Stites and Kodi S. Ravichandran
6. Modelling miRNA Regulation in Cancer Signalling Systems. miR-34a Regulation of the p53/Sirt1 Signalling Module
Xin Lai, Olaf Wolkenhauer, and Julio Vera
7. Design of Experiments to Investigate Dynamic Cell Signaling Models
Samuel Bandara and Tobias Meyer
8. Mathematical Modeling of Biochemical Systems with PottersWheel
Thomas Maiwald, Oliver Eberhardt, Julie Blumberg
9. Rule-Based Modeling of Signal Transduction: APrimer
John A.P. Sekar and James R. Faeder
10. Computational Modeling of Signal Transduction Networks: A Pedagogical Exposition
Ashok Prasad
11. Modeling Spatiotemporal Dynamics of Bacterial Populations
Hao Song and Lingchong You
12. Discrete Dynamic Modeling of Signal Transduction Networks
Assieh Saddatpour and Réka Albert
13. Analytic Methods for Modeling Stochastic Regulatory Networks
Aleksandra M. Walczak, Andrew Mugler, and Chris H. Wiggins
